KEGG   Sus scrofa (pig): 396628
Entry
396628            CDS       T01009                                 
Symbol
VDR
Name
(RefSeq) vitamin D3 receptor
  KO
K08539  vitamin D3 receptor
Organism
ssc  Sus scrofa (pig)
Pathway
ssc04928  Parathyroid hormone synthesis, secretion and action
ssc04961  Endocrine and other factor-regulated calcium reabsorption
ssc04978  Mineral absorption
ssc05152  Tuberculosis
ssc05207  Chemical carcinogenesis - receptor activation
Brite
KEGG Orthology (KO) [BR:ssc00001]
 09150 Organismal Systems
  09152 Endocrine system
   04928 Parathyroid hormone synthesis, secretion and action
    396628 (VDR)
  09154 Digestive system
   04978 Mineral absorption
    396628 (VDR)
  09155 Excretory system
   04961 Endocrine and other factor-regulated calcium reabsorption
    396628 (VDR)
 09160 Human Diseases
  09161 Cancer: overview
   05207 Chemical carcinogenesis - receptor activation
    396628 (VDR)
  09171 Infectious disease: bacterial
   05152 Tuberculosis
    396628 (VDR)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ssc01009]
    396628 (VDR)
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:ssc03000]
    396628 (VDR)
  09183 Protein families: signaling and cellular processes
   03310 Nuclear receptors [BR:ssc03310]
    396628 (VDR)
Protein phosphatases and associated proteins [BR:ssc01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     396628 (VDR)
Transcription factors [BR:ssc03000]
 Eukaryotic type
  Zinc finger
   Cys4 thyroid hormone receptor-like
    396628 (VDR)
Nuclear receptors [BR:ssc03310]
 1. Thyroid hormone like
  1I. Vitamin D3 like receptor
   396628 (VDR)
SSDB
Motif
Pfam: zf-C4 Hormone_recep
Other DBs
NCBI-GeneID: 396628
NCBI-ProteinID: NP_001090883
Ensembl: ENSSSCG00000020864
UniProt: A3RGC1
Position
5:complement(78205807..78266505)
AA seq 427 aa
MEATAASTSLPDPGDFDRNVPRICGVCGDRATGFHFNAMTCEGCKGFFRRSMKRKALFTC
PFNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSL
RPKLSEEQQRIIAILLDAHHKTYDPTYADFGQFRPPVRGDEEEGTLPSRSSSAHAPSFSG
SSSSSCSDQYTSSPDTMEPASFSHLDLSEEDSDDPSVTLDLSQLSMLPHLADLVSYSIQK
VIGFAKMIPGFRDLTAEDQIVLLKSSAIEVIMLRSNQSFTMDDMSWTCGSRDYKYQVSDV
AKAGHSLELIEPLIKFQVGLKKLNLHEEEHVLLMAICIVSPDRPGVQDPTLIEAIQDRLS
NTLQTYIRCRHPPPGSHLLYAKMIQKLADLRSLNEEHSKQYRCLSFQPECSMKLTPLVLE
VFGNEIS
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggaggcgacggcagccagcacttccttacctgaccccggcgactttgaccggaatgtg
ccccggatctgcggggtgtgcggagaccgagccaccggcttccatttcaatgctatgacc
tgcgaaggctgcaaaggcttcttcagacggagcatgaagcgcaaggcgctgtttacctgt
cccttcaatggagactgccgcatcaccaaggacaaccgccgccactgccaggcctgccgg
ctcaagcgctgtgtggacatcggcatgatgaaggagttcatcctgacggacgaggaggtg
cagcgcaagcgggagatgatcctcaagcggaaggaggaggaggccttgaaggacagtctg
cggcctaagctgtcggaggagcagcagcgcatcatcgccatcctgctggacgcccaccac
aagacctatgaccccacctatgctgacttcggccagttccggcctccggttcgcggggat
gaggaggaagggaccctcccctccaggtcttcctccgcgcatgcgcccagcttctccgga
agctcgtcctcttcctgctcagatcaatacacctcctctccagacacgatggagccagcc
agcttctcccacctggatctgagcgaagaagactctgatgacccttctgtgaccctggac
ctgtcccagctctccatgctgccccatctggctgacctggtcagttacagtatccaaaag
gtcatcggctttgccaagatgatcccagggttcagggacctcaccgctgaggaccagatc
gtgctgctgaagtcaagtgccatcgaggtcatcatgctgcgctccaaccagtccttcacc
atggacgacatgtcctggacctgtggcagccgggactacaagtaccaagtcagcgacgtg
gccaaagccggacacagcctggagctgatcgagcccctcatcaagttccaggtggggctg
aagaagctgaacctgcacgaggaggagcacgtgctgctcatggccatctgcatcgtctcc
ccagaccgtcccggggtgcaggaccccacgctgatcgaggccatccaggaccgcctgtcc
aacacgctgcagacctacatccgctgccgccacccgcccccgggcagccacctgctctac
gccaagatgatccagaagctggccgacctgcgtagcctgaacgaggagcactccaagcag
taccgctgcctctccttccagcccgagtgcagcatgaagctcacaccccttgtgcttgag
gtgtttggcaacgagatctcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (5)   
   KEGG PATHWAY (5)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   SWISS-PROT (1)   
   RefSeq(pep) (3)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (2)   
   Pfam (2)   
All databases (33)   

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